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lncRNA Databases
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biomarker biomarkers bladder cancer breast cancer cancer database epigenetics Exiqon gastric cancer gene expression gene regulation Harvard University HOTAIR junk dna lincrna lincRNAs lncrna lncRNA database lncrnas long intergenic non-coding rna long non-coding RNA long non-coding RNAs long noncoding rna Long Noncoding RNAs MALAT1 microarray microrna micrornas miRNA Nanjing Medical University Nature ncRNA ncrnas non-coding rna non-coding rnas noncoding RNA noncoding rnas Prostate Cancer rna RNA-Seq Stanford University Stellaris The First Affiliated Hospital of Nanjing Medical University X chromosome XIST
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Online Tools
lncRNAMap: A map of putative regulatory functions in the long non-coding transcriptome
lncRNA Disease - A computational framework to infer human disease-associated lncRNAs
ncFANs - a web server for functional annotation of lncRNAs.
Linc2GO - a Human LincRNA Function Annotation Resource Based On ceRNA Hypothesis.
Software.ncrna.org - a portal site for web servers and software tools for sequence/structure analyses of non-conding RNAs.
RegRNA 2.0 - an easy to use web server for identifying regulatory RNA motifs and functional sites.
iSeeRNA - identification of long intergenic non-coding RNA transcripts from RNA-Seq data
Noncoder - a web interface for exon array-based detection of long non-coding RNAs
ncPRO-seq - (Non-Coding RNA PROfiling in sRNA-seq) is a tool for annotation and profiling of ncRNAs using deep-sequencing data
HUGO - genenames/RNA/lncRNA - standardised nomenclature for all human genes
lncRScan (long non-coding RNA Scan) - a pipeline consists of five steps for detecting novel long non-coding RNAs from a set of candidate transcripts annotated by Cuffcompare
Pipe-R - a pipeline for the detection and mapping of long non-coding RNAs
PhyloCSF - a comparative genomics method to distinguish protein coding and non-coding regions
miRcode- a map of putative microRNA target sites in the long non-coding transcriptome
CoRAL- predicting non-coding RNAs from small RNA-sequencing data
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